Navigating the signaling landscape of Ralstonia solanacearum: a study of bacterial two-component systems.

Ralstonia solanacearum, the bacterium that causes bacterial wilt, is a destructive phytopathogen that can infect over 450 different plant species. Several agriculturally significant crop plants, including eggplant, tomato, pepper, potato, and ginger, are highly susceptible to this plant disease, which has a global impact on crop quality and yield. There is currently no known preventive method that works well for bacterial wilt. Bacteria use two-component systems (TCSs) to sense their environment constantly and react appropriately. This is achieved by an extracellular sensor kinase (SK) capable of sensing a suitable signal and a cytoplasmic response regulator (RR) which gives a downstream response. Moreover, our investigation revealed that R. solanacearum GMI1000 possesses a substantial count of TCSs, specifically comprising 36 RRs and 27 SKs. While TCSs are known targets for various human pathogenic bacteria, such as Salmonella, the role of TCSs in R. solanacearum remains largely unexplored in this context. Notably, numerous inhibitors targeting TCSs have been identified, including GHL (Gyrase, Hsp, and MutL) compounds, Walk inhibitors, and anti-TCS medications like Radicicol. Consequently, the investigation into the involvement of TCSs in virulence and pathogenesis has gained traction; however, further research is imperative to ascertain whether TCSs could potentially supplant conventional anti-wilt therapies. This review delves into the prospective utilization of TCSs as an alternative anti-wilt therapy, focusing on the lethal phytopathogen R. solanacearum.

Computational exploration of the genomic assignments, molecular structure, and dynamics of the ccdABXn2 toxin-antitoxin homolog with its bacterial target, the DNA gyrase, in the entomopathogen Xenorhabdus nematophila.

Toxin-antitoxin (TA) modules, initially discovered on bacterial plasmids and subsequently identified within chromosomal contexts, hold a pivotal role in the realm of bacterial physiology. Among these, the pioneering TA system, ccd (Control of Cell Death), primarily localized on the F-plasmid, is known for its orchestration of plasmid replication with cellular division. Nonetheless, the precise functions of such systems within bacterial chromosomal settings remain a compelling subject that demands deeper investigation. To bridge this knowledge gap, our study focuses on exploring ccdABXn2, a chromosomally encoded TA module originating from the entomopathogenic bacterium Xenorhabdus nematophila. We meticulously delved into the system's genomic assignments, structural attributes, and functional interplay. Our findings uncovered intriguing patterns-CcdB toxin homologs exhibited higher conservation levels compared to their CcdA antitoxin counterparts. Moreover, we constructed secondary as well as tertiary models for both the CcdB toxin and CcdA antitoxin using threading techniques and subsequently validated their structural integrity. Our exploration extended to the identification of key interactions, including the peptide interaction with gyrase for the CcdB homolog and CcdB toxin interactions for the CcdA homolog, highlighting the intricate TA interaction network. Through docking and simulation analyses, we unequivocally demonstrated the inhibition of replication via binding the CcdB toxin to its target, DNA gyrase. These insights provide valuable knowledge about the metabolic and physiological roles of the chromosomally encoded ccdABXn2 TA module within the context of X. nematophila, significantly enhancing our comprehension of its functional significance within the intricate ecosystem of the bacterial host.Communicated by Ramaswamy H. Sarma.

Unravelling the genomic secrets of bacterial fish pathogens: a roadmap to aquaculture sustainability.

In the field of aquaculture, bacterial pathogens pose significant challenges to fish health and production. Advancements in genomic technologies have revolutionized our understanding of bacterial fish pathogens and their interactions with their host species. This review explores the application of genomic approaches in the identification, classification, and characterization of bacterial fish pathogens. Through an extensive analysis of the literature, we have compiled valuable data on 79 bacterial fish pathogens spanning 13 different phyla, encompassing their whole genome sequences. By leveraging high-throughput sequencing techniques, researchers have gained valuable insights into the genomic makeup of these pathogens, enabling a deeper understanding of their virulence factors and mechanisms of host interaction. Furthermore, genomic approaches have facilitated the discovery of potential vaccine and drug targets, opening up new avenues for the development of effective interventions against fish pathogens. Additionally, the utilization of genomics in fish disease resistance and control in aquaculture has shown promising results, enabling the identification of genetic markers associated with disease resistance traits. This review highlights the significant contributions of genomics to the field of fish pathogen research and underscores its potential for improving disease management strategies and enhancing the sustainability of aquaculture practices.

Combined In Silico and In Vitro Study to Reveal the Structural Insights and Nucleotide-Binding Ability of the Transcriptional Regulator PehR from the Phytopathogen Ralstonia solanacearum.

The transcriptional regulator PehR regulates the synthesis of the extracellular plant cell wall-degrading enzyme polygalacturonase, which is essential in the bacterial wilt of plants caused by one of the most devastating plant phytopathogens, Ralstonia solanacearum. The bacterium has a wide global distribution infecting many different plant species, resulting in massive agricultural and economic losses. Because the PehR molecular structure has not yet been determined and the structural consequences of PehR on ligand binding have not been thoroughly investigated, we have used an in silico approach combined with in vitro experiments for the first time to characterize the PehR regulator from a local isolate (Tezpur, Assam, India) of the phytopathogenic bacterium R. solanacearum F1C1. In this study, an in silico approach was employed to model the 3D structure of the PehR regulator, followed by the binding analysis of different ligands against this regulatory protein. Molecular docking studies suggest that ATP has the highest binding affinity for the PehR regulator. By using molecular dynamics (MD) simulation analysis, involving root-mean-square deviation, root-mean-square fluctuations, hydrogen bonding, radius of gyration, solvent-accessible surface area, and principal component analysis, it was possible to confirm the sudden conformational changes of the PehR regulator caused by the presence of ATP. We used an in vitro approach to further validate the formation of the PehR-ATP complex. In this approach, recombinant DNA technology was used to clone, express, and purify the gene encoding the PehR regulator from R. solanacearum F1C1. Purified PehR was used in ATP-binding experiments using fluorescence spectroscopy and Fourier transform infrared spectroscopy, the outcomes of which showed a potent binding to ATP. The putative PehR-ATP-binding analysis revealed the importance of the amino acids Lys190, Glu191, Arg192, Arg375, and Asp378 for the ATP-binding process, but further study is required to confirm this. It will be simpler to comprehend the catalytic mechanisms of a crucial PehR regulator process in R. solanacearum with the aid of the ATP-binding process hints provided by these structural biology applications.

Microliter spotting and micro-colony observation: A rapid and simple approach for counting bacterial colony forming units.

For enumerating viable bacteria, traditional dilution plating to count colony forming units (CFUs) has always been the preferred method in microbiology owing to its simplicity, albeit being laborious and time-consuming. Similar CFU counts can be obtained by quantifying growing micro-colonies in conjunction with the benefits of a microscope. Here, we employed a simple method of five to ten microliter spotting of a diluted bacterial culture multiple times on a single Petri dish followed by determining CFU by counting micro-colonies using a phase-contrast microscope. In this method, the CFU of an Escherichia coli culture can be estimated within a four-hour period after spotting. Further, within a ten-hour period after spotting, CFU in a culture of Ralstonia solanacearum, a bacterium with a generation time of around 2 h, can be estimated. The CFU number determined by micro-colonies observed for 106-fold dilutions or lower is similar to that obtained by the dilution plating method for 107-fold dilutions or lower. Micro-colony numbers observed in the early hours of growth (2 h in case of E. coli and 8 h in case of R. solanacearum) were found to remain consistent at later hours (4 h in case of E. coli and 10 h in case of R. solanacearum), where the visibility of the colonies was better due to a noticeable increase in the size of the colonies. This suggested that micro-colonies observed in the early hours indeed represent the bacterial number in the culture. Practical applications to this counting method were employed in studying the rifampicin-resistant mutation rate as well as performing a fluctuation test in E. coli. The spotting method described here to enumerate bacterial CFU results in reduction of labour, time and resources.

Genomic assortment and interactive insights of the chromosomal encoded control of cell death (ccd) toxin-antitoxin (TA) module in Xenorhabdus nematophila.

In the present circumstances, toxin-antitoxin (TA) modules have a great consideration due to their elusive role in bacterial physiology. TA modules consist of a toxic part and a counteracting antitoxin part and these are abundant genetic loci harbored on bacterial plasmids and chromosomes. The control of cell death (ccd) TA locus was the first identified TA module and its unitary function (such as plasmid maintenance) has been described, however, the function of its chromosomal counterparts is still ambiguous. Here, we are exploring the genomic assortment, structural and functional association of chromosomally encoded ccdAB TA homolog (ccdABXn1) in the genome of an entomopathogenic bacterium Xenorhabdus nematophila. This bacterium is a symbiotic model with the nematode Steinernema carpocapsae that infects and kills the host insect. By genomic assortment analysis, our observations suggested that CcdA antitoxin homologs are not more closely related than CcdB toxin homologs. Further results suggest that the ccdABXn1 TA homolog has sulphonamide (such as 4C6, for CcdA homolog) and peptide (such as gyrase, for CcdB homolog) ligand partners with a typical TA interaction network that may affect essential cellular metabolism of the X. nematophila. Collectively, our results improve the knowledge and conception of the metabolic interactive role of ccdAB TA homologs in X. nematophila physiology.Communicated by Ramaswamy H. Sarma.

A Three-Dimensional Analysis of Morphological Variations in Maxillary Second Molar in a North Indian Population Using Cone-Beam Computed Tomography.

BACKGROUND: Cone beam computed tomography (CBCT) has evolved in the field of endodontics and has helped to diagnose and treat the case very easily and accurately. The researchers set out to pinpoint the exact placement of the roots and canals in the maxillary second molars of North Indians by analyzing CBCT pictures. METHODS: In this study, in vivo CBCT was used to examine the maxillary second molars (n = 70) in detail. Both the number and configuration of root canals may be determined using Vertucci's categorization. RESULTS: Most people had three roots in their second molars (85.7%). Most maxillary second molars that had three roots looked like they had three separate roots (81.7%). In the roots of 85.7% of maxillary second molars, one canal was found in the mesiobuccal roots, and 14.2% had an MB2 canal. All of the canals in the palatal, distobuccal root, and MB1 root were Type I. The Type II canal configuration was found in 11.7% of MB2 canals. Type IV canals were found in 5% of the MB2 canals. The number of maxillary second molars with MB2 was found to be the same for both men and women (P =0.11). The number of MB2 cases did not depend on where the teeth were or how old the person was (P=0.08 and 0.06, respectively). The fact that both second molars appeared at the same time was important (P<0.001). CONCLUSIONS: We report the occurrence of unusual morphologic abnormalities that affect only one root and have only been described in case reports. CBCT scans can help doctors better understand root canal anatomy and potentially enhancing endodontic management outcomes.

Functional and transcriptional analysis of chromosomal encoded hipBAXn2 type II toxin-antitoxin (TA) module from Xenorhabdus nematophila.

Xenorhabdus nematophila is an entomopathogenic bacterium that synthesizes numerous toxins and kills its larval insect host. Apart from such toxins, its genome also has a plethora of toxin-antitoxin (TA) systems. The role of TA systems in bacterial physiology is debatable; however, they are associated with maintaining bacterial genomic stability and their survival under adverse environmental conditions. Here, we explored the functionality and transcriptional regulation of the type II hipBAXn2 TA system. This TA system was identified in the genome of X. nematophila ATCC 19061, which consists of the hipAXn2 toxin gene encoding 278 amino acid residues and hipBXn2 encoding antitoxin of 135 amino acid residues. We showed that overexpression of HipAXn2 toxin reduced the growth of Escherichia coli cells in a bacteriostatic manner, and amino-acids G8, H164, N167, and S169 were key residues for this growth reduction. Promoter activity and expression profiling of the hipBAXn2 TA system was showed that transcription was induced in both E. coli as well as X. nematophila upon exposure to different stress conditions. Further, we have exhibited the binding features of HipAXn2 toxin and HipBXn2 antitoxin to their promoter. This study provides evidence for the presence of a functional and well-regulated hipBAXn2 TA system in X. nematophila.

Bacterial toxin-antitoxin modules: classification, functions, and association with persistence.

Toxin-antitoxin (TA) modules are ubiquitous gene loci among bacteria and are comprised of a toxin part and its cognate antitoxin part. Under normal physiological conditions, antitoxin counteracts the toxicity of the toxin whereas, during stress conditions, TA modules play a crucial role in bacterial physiology through involvement in the post-segregational killing, abortive infection, biofilms, and persister cell formation. Most of the toxins are proteinaceous that affect translation or DNA replication, although some other intracellular molecular targets have also been described. While antitoxins may be a protein or RNA, that generally neutralizes its cognate toxin by direct interaction or with the help of other signaling elements and thus helps in the TA module regulation. In this review, we have discussed the current state of the multifaceted TA (type I-VIII) modules by highlighting their classification and specific targets. We have also discussed the presence of TA modules in the various pathogens and their role in antibiotic persistence development as well as biofilm formation, by influencing the different cellular processes. In the end, assembling knowledge about ubiquitous TA systems from pathogenic bacteria facilitated us to propose multiple novel antibacterial strategies involving artificial activation of TA modules.

Novel Toxin-antitoxin System Xn-mazEF from Xenorhabdus nematophila: Identification, Characterization and Functional Exploration.

BACKGROUND: Xenorhabdus nematophila maintains species-specific mutual interaction with nematodes of Steinernema genus. Type II Toxin Antitoxin (TA) systems, the mazEF TA system controls stress and programmed cell death in bacteria. OBJECTIVE: This study elucidates the functional characterization of Xn-mazEF, a mazEF homolog in X. nematophila by computational and in vitro approaches. METHODS: 3D- structural models for Xn-MazE toxin and Xn-MazF antitoxin were generated, validated and characterized for protein - RNA interaction analysis. Further biological and cellular functions of Xn-MazF toxin were also predicted. Molecular dynamics simulations of 50ns for Xn- MazF toxin complexed with nucleic acid units (DU, RU, RC, and RU) were performed. The MazF toxin and complete MazEF operon were endogenously expressed and monitored for the killing of Escherichia coli host cells under arabinose induced tightly regulated system. RESULTS: Upon induction, E. coli expressing toxin showed rapid killing within four hours and attained up to 65% growth inhibition, while the expression of the entire operon did not show significant killing. The observation suggests that the Xn-mazEF TA system control transcriptional regulation in X. nematophila and helps to manage stress or cause toxicity leading to programmed death of cells. CONCLUSION: The study provides insights into structural and functional features of novel toxin, Xn- MazF and provides an initial inference on control of X. nematophila growth regulated by TA systems.

The hipBAXn operon from Xenorhabdus nematophila functions as a bonafide toxin-antitoxin module.

Here, for the first time, we have investigated the hipBAXn toxin-antitoxin (TA) module from entomopathogenic bacterium Xenorhabdus nematophila. It is a type II TA module that consists of HipAXn toxin and HipBXn antitoxin protein and located in the complementary strand of chromosome under XNC1_operon 0810 locus tag. For functional analysis, hipAXn toxin, hipBXn antitoxin, and an operon having both genes were cloned in pBAD/His C vector and transformed in Escherichia coli cells. The expression profiles and endogenous toxicity assay were performed in these cells. To determine the active amino acid residues responsible for the toxicity of HipAXn toxin, site-directed mutagenesis (SDM) was performed. SDM results showed that amino acid residues S149, D306, and D329 in HipAXn toxin protein were significantly essential for its toxicity. For transcriptional analysis, the 157 bp upstream region of the hipBAXn TA module was identified as a promoter with bioinformatics tools. Further, the LacZ reporter construct with promoter region was prepared and LacZ assays as well as reverse transcriptase-polymerase chain reaction (RT-PCR) analysis was performed under different stress conditions. Electrophoretic mobility shift assay (EMSA) was also performed with recombinant HipAXn toxin, HipBXn antitoxin protein, and 157 bp promoter region. Results showed that the hipBAXn TA module is a well-regulated system in which the upregulation of gene expression was also found compulsive in different SOS conditions. KEY POINTS: •Functional characterization of hipBA Xn TA module from Xenorhabdus nematophila. •hipBA Xn TA module is a functional type II TA module. •Transcriptional characterization of hipBA Xn TA module. •hipBA Xn TA module is a well regulated TA module. Graphical abstract.

Fabrication of leaf extract mediated bismuth oxybromide/oxyiodide (BiOBrxI1-x) photocatalysts with tunable band gap and enhanced optical absorption for degradation of organic pollutants.

The use of Azadirachta indica (A.I.) leaf extract to synthesize green photocatalysts for efficient separation of photogenerated charges has been a promising way to enhance the photocatalytic activity. Herein, we report the synthesis of green bismuth oxybromide/oxyiodide composites (G-BiOBrxI1-x) using A.I. leaf extract with effective size control, high specific surface area, and porosity. The A.I. leaf extract also acted as an excellent sensitizer that boosted the optical window of the G-BiOBrxI1-x photocatalysts. The as-prepared G-BiOBrxI1-x photocatalysts possessed three-dimensional (3-D) nanoplates like structure with successive modulation of the band gaps from 2.28 eV to 1.98 eV by varying the bromine/iodine (Br/I) ratio. Furthermore, the photocatalytic activity of the G-BiOBrxI1-x samples was measured and compared with the bismuth oxybromide/oxyiodide composite (C-BiOBr0.5I0.5) synthesized via conventional hydrolysis route (without the leaf extract). The G-BiOBrxI1-x photocatalysts degraded higher percentage of methyl orange (MO) and amoxicillin (AMX) than C-BiOBr0.5I0.5 under visible light irradiation. The superior photocatalytic efficiency was attributed to the multiple heterojunctions developed between BiOBr, BiOI, and electron-accepting π-conjugated system offered by leaf extract constituents, thereby facilitating the charge transfer process and effective separation of photogenerated charges.

A Review on BiOX (X= Cl, Br and I) Nano-/Microstructures for Their Photocatalytic Applications.

In the recent past, bismuth oxyhalides (BiOX) have been widely used for the photocatalytic degradation of the organic pollutants and other environmental remediation because of their higher stability, economic viability, nontoxicity and effective charge separation. We begin with the review of the different approaches adopted so far for BiOX (X = Cl, Br, and I) synthesis and a study of their photocatalytic performances under UV and visible light towards the various organic as well as inorganic pollutants. Later on, a study on further enhancement of the efficiency of BiOX under UV and visible light irradiation using recent advancements would be presented. The new approaches involve controlled morphology by forming composite and hybrid materials with other semiconductors and also doping with other metals and nonmetals that would undoubtedly be beneficial in the interfacial charge transfer and efficient inhibition of the photo-generated species. Herein, we would also exploit the recent developments in the research strategies for enhancing photocatalytic activity of BiOX.

Plant leaf extracts as photocatalytic activity tailoring agents for BiOCl towards environmental remediation.

The inducement of plant leaf extracts for the synthesis of various nanostructures has intrigued researchers across the earth to explore the mechanisms of biologically active compounds present in the plants. Herein, a green modified hydrolysis route has been employed for the synthesis of bismuth oxychloride i.e. BiOCl-N, BiOCl-T and BiOCl-A using plant extracts of Azadirachta indica (Neem), Ocimum sanctum (Tulsi), and Saraca indica (Ashoka), and; simultaneously, without plant extract (BiOCl-C), respectively. The as-prepared samples were examined by several microscopic and spectroscopic techniques which revealed that the biosynthesized BiOCl attained certain favorable features such as hierarchical nano-flower morphology, higher porosity, higher specific surface area and narrower band gap compared to BiOCl-C. The degradation of methyl orange (MO) and bisphenol A (BPA) using biosynthesized BiOCl were improved by 21.5% within 90 min and 18.2% within 600 min under visible light irradiation, respectively. The photocurrent response, electrochemical impedance spectroscopy (EIS) and photoluminescence (PL) studies indicated the effective inhibition of the electron-hole pair recombination and enhanced photocatalytic activity of the biosynthesized BiOCl.

TAome analysis of type-II toxin-antitoxin system from Xenorhabdus nematophila.

Here we report the first essentially complete TAome analysis for type II toxin-antitoxin (TA) system, a major class of TA modules found in bacterial system, from entomopathogenic bacterium Xenorhabdus nematophila ATCC 19061 (NCBI RefSeq NC_014228). We summarize this analysis in terms of TA locus, accession identifier, hits in conserved domain database, toxin superfamily, antitoxin superfamily and chromosomal/mobile genome/plasmid occurrences. Moreover, for TA context analyses we use six different specifications namely virulence factors, mobile genetic elements (MGE), antibiotic resistance genes, secretion systems, prophage and a classification of mobile genetic elements (ACLAME); among these hits are found for only MGE, ACLAME and prophage. A total 39 sets of TA have been discovered in which numbers of TA encoded for MGE, ACLAME and prophage are 15, 15 and 5 respectively while the remaining four have no context hit. In addition, a comparative analysis of TAome was also done with closely related bacterium Photorhabdus luminescens subsp. laumondii TTO1 (NCBI RefSeq NC_005126) and results shows that a total 8 sets of TA are conserved. Further, a bootstrap Neighbor-Joining phylogenetic tree was also constructed for major toxin protein superfamily found namely RelE, HigB, GNAT, CcdB and MazF explored in the TAome of X. nematophila. We also characterized, the most abundantly found TA module (relBE) in this TAome, functionally and transcriptionally. This first TAome analysis of type II TA modules provides new insights in multi-drug tolerance in bacterial populations.

Facile Green Synthesis of BiOBr Nanostructures with Superior Visible-Light-Driven Photocatalytic Activity.

Novel green bismuth oxybromide (BiOBr-G) nanoflowers were successfully synthesized via facile hydrolysis route using an Azadirachta indica (Neem plant) leaf extract and concurrently, without the leaf extract (BiOBr-C). The Azadirachta indica leaf extract was employed as a sensitizer and stabilizer for BiOBr-G, which significantly expanded the optical window and boosted the formation of photogenerated charge carriers and transfer over the BiOBr-G surface. The photocatalytic performance of both samples was investigated for the degradation of methyl orange (MO) and phenol (Ph) under the irradiation of visible light. The leaf extract mediated BiOBr-G photocatalyst displayed significantly higher photocatalytic activity when compared to BiOBr-C for the degradation of both pollutants. The degradation rate of MO and Ph by BiOBr-G was found to be nearly 23% and 16% more when compared to BiOBr-C under visible light irradiation, respectively. The substantial increase in the photocatalytic performance of BiOBr-G was ascribed to the multiple synergistic effects between the efficient solar energy harvesting, narrower band gap, high specific surface area, porosity, and effective charge separation. Furthermore, BiOBr-G displayed high stability for five cycles of photocatalytic activity, which endows its practical application as a green photocatalyst in the long run.

Impact of Spirituality/Religiousness on Cyber Bullying and Victimization in University Students: Mediating Effect of Emotional Intelligence.

The aim of the study was to explore the relationship between spirituality/religiousness with cyber bullying and victimization amongst Indian University students and whether emotional intelligence mediates the relationship. Data were collected from 490 University students studying in undergraduate and postgraduate courses across India. IBM AMOS was used to find reliability and validity of instruments and PROCESS macro for IBM SPSS by Preacher and Hayes (Behav Res Methods 36(4): 717-731, 2004) was used for conducting mediation analyses. Both spiritual and existential well-being were found negatively related with cyber bullying and victimization. As far as mediation goes, the negative relationships between spiritual and existential well-being with that of cyber bullying and victimization were significantly mediated by Appraisal of Self-Emotions, Appraisal of Other's Emotions and Regulation and control of Emotions dimensions of emotional intelligence. Implication and future directions are also discussed.

Biofabricated BiOI with enhanced photocatalytic activity under visible light irradiation.

In the recent past, there has been a large-scale utilization of plant extracts for the synthesis of various photocatalysts. The biofabrication technology eliminates the usage of harmful chemicals and serves as an eco-friendly approach for environmental remediation. Herein, a comparative analysis between bismuth oxyiodide synthesized via Azadirachta indica (neem) leaf extract (BiOI-G) and without leaf extract (BiOI-C) has been envisaged. The BiOI-G and BiOI-C samples were characterized by spectral and microscopic techniques, which revealed that the Azadirachta indica assisted BiOI-G attained enhanced features over BiOI-C such as narrower band gap, large surface area, porosity, increased absorption range of visible light and effectual splitting of the photogenerated e--h+ pairs. Benefiting from these enhanced features, BiOI-G degraded methyl orange (MO), rhodamine B (RhB), and benzotriazole (BT) at a significantly higher rate in comparison to BiOI-C. The degradation rate of MO, RhB and BT by BiOI-G was observed to be 1.3, 1.25 and 1.29 times higher in comparison to BiOI-C. Moreover, BiOI-G displayed high stability upto five cycles of the photocatalytic activity, which endow its effectiveness as a highly-efficient green photocatalyst.

Functional annotation of a novel toxin-antitoxin system Xn-RelT of Xenorhabdus nematophila; a combined in silico and in vitro approach.

Toxin-antitoxin (TA) complexes play an important role in stress responses and programmed cell death in bacteria. The RelB-RelE toxin antitoxin system is well studied in Escherichia coli. In this study, we used combined in silico and in vitro approaches to study a novel Xn-RelT toxin from Xenorhabdus nematophila bearing its own antitoxin Xn-RelAT-a RelB homolog of E. coli. The structure for this toxin-antitoxin pair is yet unknown. We generated homology-based models of X. nematophila RelT toxin and antitoxin. The deduced models were further characterized for protein-nucleic acid, protein-protein interactions and gene ontology. A detrimental effect of recombinant Xn-RelT on host E. coli was determined through endogenous toxicity assay. When expressed from a isopropyl ß-D-1-thiogalactopyranoside-regulated LacZ promoter, Xn-RelT toxin showed a toxic effect on E. coli cells. These observations imply that the conditional cooperativity governing the Xn-RelT TA operon in X. nematophila plays an important role in stress management and programmed cell death.

Zinc peroxide nanomaterial as an adsorbent for removal of Congo red dye from waste water.

In the past decade, various natural byproducts, advanced metal oxide composites and photocatalysts have been reported for removal of dyes from water. Although these materials are useful for select applications, they have some limitations such as use at fixed temperature, ultra violet (UV) light and the need for sophisticated experimental set up. These materials can remove dyes up to a certain extent but require long time. To overcome these limitations, a promising adsorbent zinc peroxide (ZnO2) nanomaterial has been developed for the removal of Congo red (CR) dye from contaminated water. ZnO2 is highly efficient even in the absence of sunlight to remove CR from contaminated water upto the permissible limits set by the World Health Organization (WHO) and the United States- Environmental Protection Agency (US-EPA). The adsorbent has a specific property to adjust the pH of the test solution within 6.5-7.5 range irrespective of acidic or basic nature of water. The adsorption capacity of the material for CR dye was 208mgg-1 within 10min at 2-10pH range. The proposed material could be useful for the industries involved in water purification. The removal of CR has been confirmed by spectroscopic and microscopic techniques. The adsorption data followed a second order kinetics and Freundlich isotherm.